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ACLOQUE Hervé

  • Animal Genetics and Integrative Biology (GABI), INRAE, Jouy en Josas, France
  • Epigenetics , Genomics, Reproduction, Reproductive and developmental biology
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Recommendations:  2

Reviews:  0

Areas of expertise
EDUCATION 2015 Habilitation à diriger des recherches, University of Toulouse 2004 PhD in Life Sciences obtained April 30th, 2004 (Ph.D. supervisor: Pr. Jacques Samarut) Ecole Normale Supérieure de Lyon, Laboratoire de Biologie Moléculaire et Cellulaire, France 1999 Master of Sciences (Reproduction Physiology), University Paris VI Pierre et Marie Curie, France 1998 Master (Engineer) degree in animal production science, Institut National Agronomique Paris-Grignon, France I am currently working on different aspects of human and animal biology. In collaboration with U935 in Villejuif, I coordinate a research project aiming at evaluating the effects of chronic jetlag on breast cancer progression and malignancy. I am also working on the development of a cellular platform based on pig pluripotent stem cells (PSCs) to improve genetic prediction using ex vivo phenotyping. For this purpose I am currently coordinating a national project to optimize the quality of pig PSCs for long term culture and to preserve their differentiation potential. I am also actively contributing to the FAANG initiative, an international effort to improve the genome annotation of livestock species (www.faang.org). Within this, I am deputy coordinator of GENE-SWitCH, a recently funded european H2020 project which objective is to improve the functional annotation of chicken and pig genome and its transfer to animal selection.

Recommendations:  2

23 Aug 2023
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Ensuring ethical animal welfare research: Are more ethics review committees the solution?

Can a consensus be reached on the ethical review of animal experimentation for livestock species?

Recommended by based on reviews by Christian Nawroth, Patrick Gonin and Leon borgdorf

"Ensuring ethical animal welfare research: Are more ethics review committees the solution?" by Birte Nielsen and colleagues [1] provides food for thought on the ethical assessment of experiments involving farm animals. While regulations can provide a precise framework, they differ from country to country and do not consider several cases, mainly when the experimentation involves non- or minimally invasive manipulations. It is also the case when research projects use farmed animals that do not fall within the scope of the regulations on animal experimentation but have undergone practices that can be authorised on farms but may raise ethical questions (tail docking, live castration, tooth filing, beak trimming, dehorning). On the other hand, the heterogeneity of the criteria taken into account by the ethics committees, when they exist (and this can differ greatly from one country to another), do not necessarily correspond to the criteria of the journals, the reviewers and the bodies brought in to evaluate the research project, or to the regulations specific to each country.  

All these paradoxes lead the authors to propose solutions, the most straightforward and spontaneous of which is to ask ourselves questions about this issue upstream of the experimental design required to answer a given scientific question. While increasing the number of ethical review committees may be an insufficient option, the authors insist on the importance of improving committee members' training, taking into consideration jurisdictions' differences between countries and spending more time on ethics evaluation during manuscripts' reviewing. In addition, the upstream assessment of research projects by ethics committees, specific to an institution (research institute, universities, companies), a scientific publisher or even a dedicated international ethical review board may also be a good option.

The ethical evaluation of research projects is a question at the heart of our research activities, for which we do not have all the answers. As with scientific reviewing, we must take on the role of evaluator or be evaluated ourselves, using criteria and feelings that are not always consensual. The heterogeneity of evaluation systems within the scientific community, the lack of training for scientists in the fundamentals of ethical evaluation, and the different perceptions of the animal condition between countries and cultures can lead to a reciprocal lack of understanding between evaluator and evaluated, and sometimes a feeling of injustice, as some research may be easy to conduct in one country but difficult in another. Indeed, it is exciting to read the exchanges between the authors and the three reviewers who assessed this opinion paper to appreciate the diversity of points of view and see specific points of divergence.

In addition to animal experimentation, the judgment handed down on 30 June 2023 by the French court penalising a pig farmer for the abusive use of an authorised breeding practice (tail docking) is a perfect illustration of the fact that the ethical assessment of practices and handling of farm animals now extends far beyond the scientific world and is becoming an increasingly important factor in the relationship between society and animal breeding. Failure to consider this evolution, whether in experimentation or animal husbandry, may have legal consequences and increase the lack of understanding between our practices and how society perceives them. The questions raised and the solutions proposed in the article by Nielsen et al. are central to our concerns, not only for the scientific community but also to meet the expectations of all stakeholders.

Finally, although the authors do not directly address the question of genome editing and research using edited farm animals, this is and will be at the heart of future issues concerning the ethical evaluation of research projects. As with practices and manipulations, the intentionality of the modifications induced leads us to question and evaluate, in farmed species, their consequences on animal welfare and their relevance to society and the development of more sustainable and socially accepted animal husbandry.

Reference

[1] Nielsen, B. L., Golledge, H. D. R., Chou, J., Camerlink, I., Pongrácz, P., Ceballos, M., Whittaker, A. L., Olsson, I. S. (2023) Ensuring ethical animal welfare research: Are more ethics review committees the solution? OSF Preprints. Ver. 3 peer-reviewed and recommended by Peer Community in Animal Science. https://doi.org/10.31219/osf.io/s6459

09 Apr 2022
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The impact of housing conditions on porcine mesenchymal stromal/stem cell populations differ between adipose tissue and skeletal muscle

Housing conditions affect cell populations in adipose and muscle tissues of pigs

Recommended by based on reviews by 2 anonymous reviewers

The adaptability of livestock to changing environments is based in particular on their genetic characteristics but also on the farming conditions to which they are subjected. However, this last point is poorly documented and little is known about its contribution to environmental challenges. The study by Quéméner and colleagues [1] addresses this question by assessing the effect of two hygiene conditions (good vs poor) on the distribution of cell populations present in adipose and muscle tissues of pigs divergently selected for feed efficiency [2].

The working hypothesis is that degraded housing conditions would be at the origin of an hyper stimulation of the immune system that can influence the homeostasis of adipose tissue and skeletal muscle and consequently modulate the cellular content of these tissues. Cellular compositions are thus interesting intermediate phenotypes for quantifying complex traits. The study uses pigs divergently selected for residual feed intake (RFI+ and RFI-) to assess whether there is a genetic effect associated with the observed phenotypes. 

The study characterized different stromal cell populations based on the expression of surface markers: CD45 to separate hematopoietic lineages and markers associated with the stem properties of mesenchymal cells: CD56, CD34, CD38 and CD140a. The authors observed that certain subpopulations are differentially enriched according to the hygiene condition (good vs poor) in adipose and skeletal tissue (CD45-CD56-) sometimes with an associated (genetic) lineage effect. This pioneering study validates a number of tools for characterizing cell subpopulations present in porcine adipose and muscle tissue. It confirms that housing conditions can have an effect on intermediate phenotypes such as intra-tissue cell populations. This pioneering work will pave the way to better understand the effects of livestock systems on tissue biology and animal phenotypes and to characterize the nature and function of progenitor cells present in muscle and adipose tissue.

[1] Quéméner A, Dessauge F, Perruchot MH, Le Floc’h N, Louveau I. 2022. The impact of housing conditions on porcine mesenchymal stromal/stem cell populations differ between adipose tissue and skeletal muscle. bioRxiv 2021.06.08.447546, ver. 3 peer-reviewed and recommended by Peer Community in Animal Science. https://doi.org/10.1101/2021.06.08.447546 

[2] Gilbert H, Bidanel J-P, Gruand J, Caritez J-C, Billon Y, Guillouet P, Lagant H, Noblet J, Sellier P. 2007. Genetic parameters for residual feed intake in growing pigs, with emphasis on genetic relationships with carcass and meat quality traits. Journal of Animal Science 85:3182–3188. https://doi.org/10.2527/jas.2006-590.

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ACLOQUE Hervé

  • Animal Genetics and Integrative Biology (GABI), INRAE, Jouy en Josas, France
  • Epigenetics , Genomics, Reproduction, Reproductive and developmental biology
  • recommender

Recommendations:  2

Reviews:  0

Areas of expertise
EDUCATION 2015 Habilitation à diriger des recherches, University of Toulouse 2004 PhD in Life Sciences obtained April 30th, 2004 (Ph.D. supervisor: Pr. Jacques Samarut) Ecole Normale Supérieure de Lyon, Laboratoire de Biologie Moléculaire et Cellulaire, France 1999 Master of Sciences (Reproduction Physiology), University Paris VI Pierre et Marie Curie, France 1998 Master (Engineer) degree in animal production science, Institut National Agronomique Paris-Grignon, France I am currently working on different aspects of human and animal biology. In collaboration with U935 in Villejuif, I coordinate a research project aiming at evaluating the effects of chronic jetlag on breast cancer progression and malignancy. I am also working on the development of a cellular platform based on pig pluripotent stem cells (PSCs) to improve genetic prediction using ex vivo phenotyping. For this purpose I am currently coordinating a national project to optimize the quality of pig PSCs for long term culture and to preserve their differentiation potential. I am also actively contributing to the FAANG initiative, an international effort to improve the genome annotation of livestock species (www.faang.org). Within this, I am deputy coordinator of GENE-SWitCH, a recently funded european H2020 project which objective is to improve the functional annotation of chicken and pig genome and its transfer to animal selection.