PSZCZOŁA Marcin's profile
avatar

PSZCZOŁA Marcin

  • Genetics and Animal Breeding, Poznan University of Life Sciences, Poznan, Poland
  • Agricultural sustainability, Animal genetics, Cattle production, Emissions , Genomic selection, Statistical genetics
  • recommender

Recommendation:  1

Reviews:  0

Recommendation:  1

31 Jul 2023
article picture

The big challenge for livestock genomics is to make sequence data pay

The price of sequencing the livestock genomics

Recommended by based on reviews by Mario Calus and 1 anonymous reviewer

Using sequence data in livestock genomics has often been regarded as a solution to revolutionize livestock breeding (Meuwissen & Goddard, 2010). The main expected benefits were to enhance the accuracy of breeding values, achieve better persistence of the accuracy over generations, and enable across populations or breed predictions (Hickey, 2013). Despite the promised benefits, whole-genome sequencing has not yet been implemented in livestock breeding programs, replacing SNP arrays for routine evaluation.

In this work, Johnsson (2023) thoroughly reviewed the literature regarding the implications of whole-genome sequencing and functional genomics for livestock breeding practice. The author discusses the potential applications and reasons for difficulties in their implementation. The author speculates that the main challenge for making using the sequence data profitable is to overcome the problem of the small dimensionality of the genetic data and proposes three potential ways to achieve this goal. The first approach is better modeling of genomic segments, the second inclusion of undetected genetic variation, and the third use of functional genomic information.  

The paper presents an original and interesting perspective on the current status of the use of sequence data in livestock breeding programs and perspectives for the future. 

References

Hickey,J.M.,2013.Sequencing millions of animals for genomic selection 2.0. Journal of Animal Breeding and Genetics 130:331–332. https://doi.org/10.1111/jbg.12054 

Johnsson, M., 2023. The big challenge for livestock genomics is to make sequence data pay. arXiv, 2302.01140, ver. 4 peer-reviewed and recommended by Peer Community in Animal Science. https://doi.org/10.48550/arXiv.2302.01140 

Meuwissen, T., Goddard, M.,2010. Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 185:623–631. https://doi.org/10.1534/genetics.110.116590 

 

avatar

PSZCZOŁA Marcin

  • Genetics and Animal Breeding, Poznan University of Life Sciences, Poznan, Poland
  • Agricultural sustainability, Animal genetics, Cattle production, Emissions , Genomic selection, Statistical genetics
  • recommender

Recommendation:  1

Reviews:  0